没有问题。thought与had thought都可以表示“本来想，原以为，本来以为”，但用法不一样。thought指过去，是以现在的时间为基准；had thought指过去的过去，是以过去的时间为基准。如：
I thought you were ill, but you aren't.我以为你病了，可是你没生病。
Last year I had thought that he could go to college, but later I was told that he didn't.去年我以为他能考上大学，可是后来有人告诉我他没考上。
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